tag:jose.theoj.org,2005:/papers/tagged/modelingJournal of Open Source Education2023-08-23T12:38:51ZJournal of Open Source Educationhttps://jose.theoj.orgtag:jose.theoj.org,2005:Paper/2082023-08-23T12:38:51Z2023-08-24T00:00:21ZEcological Forecasting and Dynamics: A graduate course on the fundamentals of time series and forecasting in ecologyacceptedv2.1.02023-01-04 15:23:57 UTC662023-08-23 12:38:51 UTC62023198S.K. MorganErnestDepartment of Wildlife Ecology and Conservation, University of Florida, Biodiversity Institute, University of Florida0000-0002-6026-8530HaoYeDepartment of Wildlife Ecology and Conservation, University of Florida, Health Science Center Libraries, University of Florida0000-0002-8630-1458EthanP.WhiteDepartment of Wildlife Ecology and Conservation, University of Florida, Biodiversity Institute, University of Florida, Informatics Institute, University of Florida0000-0001-6728-774510.21105/jose.00198https://doi.org/10.5281/zenodo.8250308Rhttps://jose.theoj.org/papers/10.21105/jose.00198.pdfbiology, forecasting, ecological dynamics, time series, programming, models, uncertaintytag:jose.theoj.org,2005:Paper/1992023-08-15T15:31:26Z2023-08-16T00:00:40ZFrom Maps to Models - Tutorials for structural geological modeling using GemPy and GemGISacceptedv.1.0.02022-07-02 13:42:41 UTC662023-08-15 15:31:26 UTC62023185AlexanderJüstelFraunhofer IEG, Fraunhofer Research Institution for Energy Infrastructures and Geothermal Systems IEG, Kockerellstraße 17, 52062 Aachen, Germany, RWTH Aachen University, Geological Institute, Wüllnerstraße 2, 52062 Aachen, Germany0000-0003-0980-7479Miguelde la VargaTerranigma Solutions GmbH, Laurentiusstraße 59, 52072 Aachen, Germany0000-0001-6941-2685NilsChudallaRWTH Aachen University, Institute for Computational Geoscience, Geothermics and Reservoir Geophysics, Mathieustraße 30, 52074 Aachen, GermanyJanDavidWagnerFraunhofer IEG, Fraunhofer Research Institution for Energy Infrastructures and Geothermal Systems IEG, Kockerellstraße 17, 52062 Aachen, Germany, RWTH Aachen University, Geological Institute, Wüllnerstraße 2, 52062 Aachen, Germany0009-0007-7673-8334StefanBackRWTH Aachen University, Geological Institute, Wüllnerstraße 2, 52062 Aachen, Germany0000-0003-3134-3367FlorianWellmannFraunhofer IEG, Fraunhofer Research Institution for Energy Infrastructures and Geothermal Systems IEG, Kockerellstraße 17, 52062 Aachen, Germany, RWTH Aachen University, Institute for Computational Geoscience, Geothermics and Reservoir Geophysics, Mathieustraße 30, 52074 Aachen, Germany0000-0003-2552-187610.21105/jose.00185QML, Jupyter Notebook, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00185.pdfgeology, geographic, structural geology, GIS, spatial datatag:jose.theoj.org,2005:Paper/532023-03-23T22:04:17Z2023-06-20T00:00:51ZParFlow Sand Tank: A tool for groundwater explorationacceptedv1.0.62020-07-24 16:55:32 UTC612023-03-23 22:04:17 UTC62023179LauraE.CondonUniversity of Arizona, Department of Hydrology and Atmospheric Sciences0000-0003-3639-8076AbramFarleyUniversity of Arizona, Department of Hydrology and Atmospheric Sciences0000-0001-7871-6269SebastienJourdainKitware, Inc.0000-0001-8083-271XPatrickO'learyKitware, Inc.0000-0003-2829-4277PatrickAveryKitware, Inc.0000-0003-2254-1345LisaGallagherPrinceton Environmental Institute, Integrated Groundwater Modeling Center0000-0002-5556-7739CallaChennaultPrinceton University, Department of Civil and Environmental Engineering0000-0002-6258-0042ReedM.MaxwellPrinceton University, Department of Civil and Environmental Engineering, Princeton Environmental Institute, Integrated Groundwater Modeling Center0000-0002-1364-444110.21105/jose.00179https://doi.org/10.5281/zenodo.7384472JavaScript, Vuehttps://jose.theoj.org/papers/10.21105/jose.00179.pdfgroundwater, hydrology, modeling, educationtag:jose.theoj.org,2005:Paper/1572022-12-14T15:47:40Z2023-06-20T00:00:45ZAn Active Learning Laboratory Manual for Teaching a Contemporary Undergraduate Operating System Courseacceptedv1.0.02021-11-12 18:59:42 UTC582022-12-14 15:47:40 UTC52022162SaverioPeruginiDepartment of Computer Science, University of Dayton, 300 College Park, Dayton, Ohio 45469--0280 USA0000-0002-1736-4009ZhongmeiYaoDepartment of Computer Science, University of Dayton, 300 College Park, Dayton, Ohio 45469--0280 USA0000-0002-8055-7110PhuH.PhungDepartment of Computer Science, University of Dayton, 300 College Park, Dayton, Ohio 45469--0280 USA0000-0002-4674-1184AndrewRettigDepartment of Geology and Environmental Geosciences, University of Dayton, 300 College Park, Dayton, Ohio 45469--2364 USAAdamR.BryantDepartment of Computer Science and Engineering, Wright State University, 3640 Colonel Glenn Hwy, Dayton, Ohio 45435 USARustyO.BaldwinDepartment of Computer Science, University of Dayton, 300 College Park, Dayton, Ohio 45469--0280 USADavidJ.WrightLearning Teaching Center, University of Dayton, 300 College Park, Dayton, Ohio 45469--1302 USAJohnC.GallagherDepartment of Computer Science and Engineering, Wright State University, 3640 Colonel Glenn Hwy, Dayton, Ohio 45435 USA10.21105/jose.00162https://doi.org/10.5281/zenodo.7200056Chttps://jose.theoj.org/papers/10.21105/jose.00162.pdfoperating systems, pedagogy, active learning, lab exercises, learning modules, Linux, Internet of Things, concurrency, synchronization, Communicating Sequential Processes (CSP), Go, Actor model, Elixir, cloud computing, big datatag:jose.theoj.org,2005:Paper/372022-10-09T19:04:17Z2023-06-20T00:00:54ZSedEdu: software organizing sediment-related educational modulesacceptedv1.1.62019-08-16 01:51:21 UTC562022-10-09 19:04:17 UTC52022129AndrewJ.MoodieRice University (Houston, TX, USA), University of Texas at Austin (Austin, TX, USA)0000-0002-6745-036XBrandeeCarlsonRice University (Houston, TX, USA), University of Colorado Boulder (Boulder, CO, USA)BradyZ.ForemanWestern Washington University (Bellingham, WA, USA)0000-0002-4168-0618JeffreyKwangUniversity of Illinois at Urbana-Champaign (Urbana, IL, USA), University of Massachusetts Amherst (Amherst, MA, USA)KensukeNaitoUniversity of Illinois at Urbana-Champaign (Urbana, IL, USA), Universidad de Ingeniería y Tecnología (Lima, Peru)0000-0001-8683-0846JeffreyA.NittrouerRice University (Houston, TX, USA), Texas Tech University (Lubbock, TX, USA)0000-0002-4762-015710.21105/jose.00129https://doi.org/10.5281/zenodo.7044895Pythonhttps://jose.theoj.org/papers/10.21105/jose.00129.pdfgeology, sedimentology, hydrologytag:jose.theoj.org,2005:Paper/1192022-08-26T11:38:25Z2023-06-20T00:00:47ZA virtual training module for introducing the use of Amazon Web Servicesacceptedv1.0.02021-09-09 21:21:30 UTC542022-08-26 11:38:25 UTC52022167AbhijnaParigiLab for Data Intensive Biology, School of Veterinary Medicine, University of California Davis0000-0003-2097-8818MarisaC.w.LimLab for Data Intensive Biology, School of Veterinary Medicine, University of California Davis0000-0002-5861-3737SaranyaCanchiLab for Data Intensive Biology, School of Veterinary Medicine, University of California Davis0000-0002-9404-7162JoseSanchezLab for Data Intensive Biology, School of Veterinary Medicine, University of California DavisJeremyWalterLab for Data Intensive Biology, School of Veterinary Medicine, University of California Davis0000-0001-7074-9760RaynaM.HarrisLab for Data Intensive Biology, School of Veterinary Medicine, University of California Davis0000-0002-7943-5650AmandaCharbonneauLab for Data Intensive Biology, School of Veterinary Medicine, University of California Davis0000-0001-7376-7702C.TitusBrownLab for Data Intensive Biology, School of Veterinary Medicine, University of California Davis0000-0001-6001-267710.21105/jose.00167https://doi.org/10.5281/zenodo.6816045https://jose.theoj.org/papers/10.21105/jose.00167.pdfAWS, cloud computing, reproducible researchtag:jose.theoj.org,2005:Paper/712022-04-27T20:33:30Z2022-04-28T14:55:23ZEPIDEMIC: Epidemiology Educational Codeaccepted1.0.02021-03-02 18:15:56 UTC502022-04-27 20:33:30 UTC52022149BrunaPavlackFederal Institute of Mato Grosso do Sul, State University of São Paulo0000-0002-6807-0916MalúGraveFederal University of Rio de Janeiro0000-0002-7697-0658EberDantasFederal University of Rio de Janeiro0000-0003-2693-0719JulioBasilioRio de Janeiro State University0000-0003-1040-735XLeonardode la RocaRio de Janeiro State University0000-0003-2896-228XJoãoPedroNorenbergState University of São Paulo0000-0003-3558-4053MichelTosinRio de Janeiro State University0000-0002-0112-553XLucasChavesFederal University of Uberlândia0000-0003-4567-2006DiegoMatosRio de Janeiro State University0000-0002-6711-8500MarcosIssaRio de Janeiro State University0000-0002-2811-4929RobertoLuoRio de Janeiro State University0000-0002-3822-4945AmandaCunhaGuytCity College of San Francisco0000-0001-8575-3594LuthianaSoaresFederal University of Pampa0000-0001-5314-0881RodrigoBurgosRio de Janeiro State University0000-0003-0326-395XLisandroLovisoloRio de Janeiro State University0000-0002-7404-9371AmericoCunhaRio de Janeiro State University0000-0002-8342-036310.21105/jose.00149https://doi.org/10.5281/zenodo.5930686Matlabhttps://jose.theoj.org/papers/10.21105/jose.00149.pdfepidemiology teaching, educational code, computational models, compartmental models, trend and forecast graphstag:jose.theoj.org,2005:Paper/1542022-01-26T22:07:11Z2022-01-27T00:01:05ZComputational models of human social behavior and neuroscience: An open educational course and Jupyter Book to advance computational trainingacceptedv1.0.02021-09-28 04:04:03 UTC472022-01-26 22:07:11 UTC52022146ShawnA.RhoadsGeorgetown University0000-0003-1350-9458LinGanGeorgetown University0000-0002-7775-211810.21105/jose.00146https://doi.org/10.5281/zenodo.5907205https://jose.theoj.org/papers/10.21105/jose.00146.pdfComputational Modeling, Cognitive Modeling, Model Comparison, Linear Modeling, Nonlinear Modeling, Reinforcement Learning, Psychological Science, Social Psychology, Social Behavior, Behavioral Science, Cognitive Science, Data Science, Cognitive Neuroscience, Python, Jupyter Booktag:jose.theoj.org,2005:Paper/442021-07-21T20:18:34Z2021-07-22T00:00:17ZTake a moderndive into introductory linear regression with Racceptedv0.4.02020-03-19 16:29:01 UTC412021-07-21 20:18:34 UTC42021115AlbertY.KimAssistant Professor of Statistical and Data Sciences, Smith College, Northampton, MA, USA.0000-0001-7824-306XChesterIsmayData Science Evangelist, DataRobot, Portland, OR, USA.0000-0003-2820-2547MaxKuhnSoftware Engineer, RStudio, USA.0000-0003-2402-136X10.21105/jose.00115https://doi.org/10.5281/zenodo.5119261Rhttps://jose.theoj.org/papers/10.21105/jose.00115.pdfRstats, tidyverse, regression, moderndive, modeling, modelling, kaggletag:jose.theoj.org,2005:Paper/462021-06-27T22:18:28Z2021-06-28T00:02:21ZAn open source crash course on parameter estimation of computational models using a Bayesian optimization approachacceptedv1.0.02020-04-07 10:37:11 UTC402021-06-27 22:18:28 UTC4202189MojtabaBarzegariBiomechanics Section, Department of Mechanical Engineering, KU Leuven, Belgium0000-0002-1456-0610LiesbetGerisBiomechanics Section, Department of Mechanical Engineering, KU Leuven, Belgium, Biomechanics Research Unit, GIGA in Silico Medicine, University of Liège, Belgium0000-0002-8180-144510.21105/jose.00089https://doi.org/10.5281/zenodo.5013865Jupyter Notebook, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00089.pdfinverse problems, parameter estimation, partial differential equations, Bayesian optimization