tag:jose.theoj.org,2005:/papers/tagged/computabilityJournal of Open Source Education2022-12-14T15:47:40ZJournal of Open Source Educationhttps://jose.theoj.orgtag:jose.theoj.org,2005:Paper/1572022-12-14T15:47:40Z2023-06-20T00:00:45ZAn Active Learning Laboratory Manual for Teaching a Contemporary Undergraduate Operating System Courseacceptedv1.0.02021-11-12 18:59:42 UTC582022-12-14 15:47:40 UTC52022162SaverioPeruginiDepartment of Computer Science, University of Dayton, 300 College Park, Dayton, Ohio 45469--0280 USA0000-0002-1736-4009ZhongmeiYaoDepartment of Computer Science, University of Dayton, 300 College Park, Dayton, Ohio 45469--0280 USA0000-0002-8055-7110PhuH.PhungDepartment of Computer Science, University of Dayton, 300 College Park, Dayton, Ohio 45469--0280 USA0000-0002-4674-1184AndrewRettigDepartment of Geology and Environmental Geosciences, University of Dayton, 300 College Park, Dayton, Ohio 45469--2364 USAAdamR.BryantDepartment of Computer Science and Engineering, Wright State University, 3640 Colonel Glenn Hwy, Dayton, Ohio 45435 USARustyO.BaldwinDepartment of Computer Science, University of Dayton, 300 College Park, Dayton, Ohio 45469--0280 USADavidJ.WrightLearning Teaching Center, University of Dayton, 300 College Park, Dayton, Ohio 45469--1302 USAJohnC.GallagherDepartment of Computer Science and Engineering, Wright State University, 3640 Colonel Glenn Hwy, Dayton, Ohio 45435 USA10.21105/jose.00162https://doi.org/10.5281/zenodo.7200056Chttps://jose.theoj.org/papers/10.21105/jose.00162.pdfoperating systems, pedagogy, active learning, lab exercises, learning modules, Linux, Internet of Things, concurrency, synchronization, Communicating Sequential Processes (CSP), Go, Actor model, Elixir, cloud computing, big datatag:jose.theoj.org,2005:Paper/1192022-08-26T11:38:25Z2023-06-20T00:00:47ZA virtual training module for introducing the use of Amazon Web Servicesacceptedv1.0.02021-09-09 21:21:30 UTC542022-08-26 11:38:25 UTC52022167AbhijnaParigiLab for Data Intensive Biology, School of Veterinary Medicine, University of California Davis0000-0003-2097-8818MarisaC.w.LimLab for Data Intensive Biology, School of Veterinary Medicine, University of California Davis0000-0002-5861-3737SaranyaCanchiLab for Data Intensive Biology, School of Veterinary Medicine, University of California Davis0000-0002-9404-7162JoseSanchezLab for Data Intensive Biology, School of Veterinary Medicine, University of California DavisJeremyWalterLab for Data Intensive Biology, School of Veterinary Medicine, University of California Davis0000-0001-7074-9760RaynaM.HarrisLab for Data Intensive Biology, School of Veterinary Medicine, University of California Davis0000-0002-7943-5650AmandaCharbonneauLab for Data Intensive Biology, School of Veterinary Medicine, University of California Davis0000-0001-7376-7702C.TitusBrownLab for Data Intensive Biology, School of Veterinary Medicine, University of California Davis0000-0001-6001-267710.21105/jose.00167https://doi.org/10.5281/zenodo.6816045https://jose.theoj.org/papers/10.21105/jose.00167.pdfAWS, cloud computing, reproducible researchtag:jose.theoj.org,2005:Paper/712022-04-27T20:33:30Z2022-04-28T14:55:23ZEPIDEMIC: Epidemiology Educational Codeaccepted1.0.02021-03-02 18:15:56 UTC502022-04-27 20:33:30 UTC52022149BrunaPavlackFederal Institute of Mato Grosso do Sul, State University of São Paulo0000-0002-6807-0916MalúGraveFederal University of Rio de Janeiro0000-0002-7697-0658EberDantasFederal University of Rio de Janeiro0000-0003-2693-0719JulioBasilioRio de Janeiro State University0000-0003-1040-735XLeonardode la RocaRio de Janeiro State University0000-0003-2896-228XJoãoPedroNorenbergState University of São Paulo0000-0003-3558-4053MichelTosinRio de Janeiro State University0000-0002-0112-553XLucasChavesFederal University of Uberlândia0000-0003-4567-2006DiegoMatosRio de Janeiro State University0000-0002-6711-8500MarcosIssaRio de Janeiro State University0000-0002-2811-4929RobertoLuoRio de Janeiro State University0000-0002-3822-4945AmandaCunhaGuytCity College of San Francisco0000-0001-8575-3594LuthianaSoaresFederal University of Pampa0000-0001-5314-0881RodrigoBurgosRio de Janeiro State University0000-0003-0326-395XLisandroLovisoloRio de Janeiro State University0000-0002-7404-9371AmericoCunhaRio de Janeiro State University0000-0002-8342-036310.21105/jose.00149https://doi.org/10.5281/zenodo.5930686Matlabhttps://jose.theoj.org/papers/10.21105/jose.00149.pdfepidemiology teaching, educational code, computational models, compartmental models, trend and forecast graphstag:jose.theoj.org,2005:Paper/702022-03-31T22:14:58Z2022-04-10T19:41:40ZNeuromatch Academy: a 3-week, online summer school in computational neuroscienceaccepted12021-02-15 03:10:53 UTC492022-03-31 22:14:58 UTC52022118BernardMarius't HartCVR, York University, Toronto0000-0002-0045-3769TitipatAchakulvisutUniversity of Pennsylvania, Philadelphia0000-0002-2124-2979AyoadeAdeyemiSquare wave LimitedAthenaAkramiSainsbury Wellcome Centre, University College London0000-0001-5711-0903BradlyAliceaOrthogonal Research and Education Laboratory0000-0003-3869-3175AliciaAlonso-AndresNeuroscience Institute of AlicanteDiegoAlzate-CorreaThe Ohio State University, Columbus.0000-0001-5750-0207ArashAshSmartalpha.AI, Ankara0000-0002-5567-0613JesusJ.BallesterosMassachusetts General Hospital, Boston, MA.0000-0003-2162-5117AishwaryaBalwaniGeorgia Institute of Technology0000-0002-9234-1632EleanorBattyHarvard UniversityUlrikBeierholmDurham University, England0000-0002-7296-7996AriS.BenjaminUniversity of Pennsylvania, Philadelphia0000-0001-9241-9615UpinderBhallaNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India0000-0003-1722-5188GunnarBlohmCenter for Neuroscience Studies, Queen’s University, Kingston, Ontario0000-0002-2297-3271JoachimC hBlohmCenter for Neuroscience Studies, Queen’s University, Kingston, OntarioKathrynBonnenNew York University, New York City0000-0002-9210-8275MarcoBrighamNarrativa Comum Lda, Computational and Cognitive Neuroscience Summer School, https://www.ccnss.org/0000-0001-5271-808XBingniW.BruntonUniversity of Washington, Seattle0000-0002-4831-3466JohnS.ButlerTU Dublin, School of Mathematical Sciences, City Campus, Dublin Ireland0000-0001-5567-8634BrandonCaieCenter for Neuroscience Studies, Queen’s University, Kingston, OntarioNAlex CaycoGajicEcole Normale Supérieure, PSL University, Paris0000-0003-3593-5773SharbatanuChatterjeeUniversity College London (presently Laboratoire Jean Perrin, Sorbonne Université)SpyridonChavlisInstitute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology-Hellas (FORTH), Greece0000-0002-1046-1201RuidongChenMassachusetts Institute of Technology0000-0003-0163-979XYouChengUniversity of California, Irvine0000-0002-3141-0104H.m.ChowThe University of British Columbia, Vancouver, Canada0000-0001-6294-1189RaymondChuaMcGill University & Mila, MontrealYunweiDaiEast China Normal University, ShanghaiIsaacDavidNational Autonomous University of Mexico0000-0001-7786-6257EricEjDeWittChampalimaud Research, Lisbon0000-0001-9182-8257JulienDenisINMED, Marseille0000-0002-0537-6483AlishDipaniUpload AI LLC0000-0002-9201-1369AriannaDorschelETH Zürich0000-0003-4148-1878JanDrugowitschHarvard Medical School, Boston MA0000-0002-7846-0408KshitijDwivediGoethe University Frankfurt0000-0001-6442-7140SeanEscolaColumbia University0000-0003-0645-1964HaoxueFanHarvard University, Cambridge, MA, USARoozbehFarhoodiUniversity of Pennsylvania, Philadelphia0000-0003-3374-4041YichengFeiRice UniversityPierre-ÉtienneFiquetNew York UniversityLorenzoFontolanHoward Hughes Medical Institute0000-0002-1566-6636JeremyForestNew York University, New York0000-0002-8486-5559YukiFujishimaKyushu UniversityByronV.GalbraithTalla, IncMarioGaldamezBaylor College of Medicine0000-0002-1626-4823RichardGaoUniversity of California San Diego0000-0001-5916-6433JulijanaGjorgjievaMax Planck Institute for Brain Research, Frankfurt, Germany0000-0001-7118-4079AlexanderGonzalezStanford University0000-0002-7328-9533QinglongGuYale University0000-0001-8878-4716YueqiGuoJohns Hopkins University, Baltimore MD0000-0002-2731-1058ZiyiGuoBrandeis University0000-0002-0841-2654PankajK.GuptaThe University of British Columbia, Vancouver, Canada0000-0001-6814-2812BusraTugceGurbuzBilkent University, TurkeyCarolineHaimerlNew York University0000-0003-4964-8003JordanB.HarrodHarvard-MIT Health Sciences and Technology, Cambridge MA0000-0003-3162-2112AlexandreHyafilCentre de Recerca Matemàtica, Spain0000-0002-0566-651XMartinIraniNeurodynamics of Cognition Laboratory, School of Medicine, Pontificia Universidad Catolica de Chile0000-0002-4724-2248DanielJacobsonLockheed Martin0000-0003-0887-4960MichelleJohnsonUniversity of Pennsylvania, Philadelphia0000-0002-7964-0304IlennaSimoneJonesUniversity of Pennsylvania, Philadelphia0000-0002-2169-2195GiliKarniMinerva schools at KGIRobertE.KassCarnegie Mellon UniversityHyosubEdwardKimUniversity of Delaware0000-0003-0109-593XAndreasM.KistDivision of Phoniatrics and Pediatric Audiology, Department of Otorhinolaryngology, Head & Neck Surgery, University Hospital Erlangen, Friedrich-Alexander-University Erlangen-Nürnberg, Waldstr. 1, 91054 Erlangen, Germany0000-0003-3643-7776RandalKoeneCarboncopies Brain Research Foundation, San Francisco0000-0001-8316-5326KonradKordingUniversity of Pennsylvania, Philadelphia0000-0001-8408-4499MatthewR.KrauseMontreal Neurological Institute, McGill UniversityArvindKumarKTH Royal Institute of Technology, Stockholm, Sweden0000-0002-8044-9195NormaK.KühnNeuro-Electronics Research Flanders empowered by imec, VIB and KU Leuven0000-0001-8371-2166RayLcCity University of Hong Kong0000-0001-7310-8790MatthewL.LaporteCenter for Neuroscience Studies, Queen’s University, Kingston, Ontario0000-0002-2643-657XJunseokLeeEcole Normale Supérieure, Paris, France0000-0002-8622-6259SongtingLiSchool of Mathematical Sciences, MOE-LSC, and Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai, ChinaSikunLinUniversity of California, Santa BarbaraYangLinTsinghua UniversityShuzeLiuUniversity of Pennsylvania, PhiladelphiaTonyLiuUniversity of Pennsylvania, Philadelphia0000-0002-3707-3989JesseA.LivezeyLawrence Berkeley National Laboratory0000-0003-0494-8758LinlinLuPeking University, SuoxindaJakobH.MackeUniversity of Tübingen and Max Planck Institute for Intelligent Systems0000-0001-5154-8912KellyMahaffyUniversity of ConnecticutALucasMartinsChampalimaud Center for the UnknownNicolásMartorellUniversity of Buenos Aires0000-0003-1778-7738ManoloMartínezUniversitat de Barcelona0000-0002-6194-7121MarceloG.MattarUniversity of California, San Diego0000-0003-3303-2490JorgeAurelioMenendezGatsby Computational Neuroscience Unit, University College London0000-0002-5005-8791KennethD.MillerColumbia University, New York0000-0002-1433-0647PatrickJ.MineaultIndependent Researcher0000-0001-5519-842XNosratullahMohammadiInstitute for Advanced Studies in Basic Sciences (IASBS)0000-0003-4214-2173YaldaMohsenzadehWestern University, London, ON0000-0001-8525-957XElenorMorgenrothEcole Polytechnique Federale Lausanne0000-0002-1386-6642TahaMorshedzadehUniversity of Toronto, Toronto0000-0002-0205-7647AliceClaudiaMosbergerColumbia University, New York0000-0003-1114-1469MadhuvanthiMuliyaSASTRA Deemed University, Thanjavur, IndiaMariekeMurWestern University, London, ON0000-0003-1749-9058JohnD.MurrayYale University0000-0003-4115-8181YashasNdPES University, Bengaluru0000-0003-0834-2542RichardNaudUniversity of Ottawa, Ottawa0000-0001-7383-3095PrakritiNayakKing's College London0000-0003-1356-0712AnushkaOakUniversity of HoustonItzelOlivosCastilloRice UniversitySeyedmehdiOroujiUniversity of California, IrvineJorgeOtero-MillanUniversity of California, Berkeley0000-0002-9789-8392MariusPachitariuHHMI Janelia Research Campus0000-0001-7106-814XBirajPandeyUniversity of Washington, SeattleRenatoParedesThe University of Edinburgh0000-0002-8261-3331JesseParentOrthogonal Research and Education Lab, Champaign-Urbana, IL USA0000-0002-6979-1520IlMemmingParkStony Brook University0000-0002-4255-7750MeganA. k.PetersUniversity of California, Irvine0000-0002-0248-0816XaqPitkowBaylor College of Medicine, Rice University0000-0001-6376-329XPanayiotaPoiraziInstitute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology-Hellas (FORTH), Greece0000-0001-6152-595XHaroonPopalTemple University, Philadelphia0000-0002-4508-5218SandhyaPrabhakaranMoffitt Cancer Center, Florida0000-0002-9537-507XTianQiuInstitute of Neuroscience, Chinese Academy of Science, Shanghai0000-0002-0323-8298SrinidhiRagunathanCactus Communication, IndiaRaulRodriguez-CrucesMcGill University0000-0002-2917-1212DavidRolnickMcGill University & Mila, MontrealAshishKumarSahooNational Institute of Science Education and Research, India0000-0003-1815-6655SaeedSalehinajafabadiBernstein Center for Computational Neuroscience. BerlinCristinaSavinNew York University0000-0002-3414-8244ShreyaSaxenaUniversity of Florida, Gainesville, FL0000-0003-4655-7050PaulSchraterUniversity of Minnesota, Minneapolis MN0000-0001-7853-8984KarenSchroederColumbia University, New York0000-0003-3149-4659AliceC.SchwarzeUniversity of Washington, Seattle0000-0002-9146-8068MadinehSedigh-SarvestaniMax Planck Florida Institute for NeuroscienceKYuvarajSekharFreelance Machine Learning ConsultantRezaShadmehrJohns Hopkins University0000-0002-7686-2569MaryamM.ShanechiUniversity of Southern California0000-0002-0544-7720SiddhantSharmaBlue Marble Space Institute of Science, Seattle, Washington, USA0000-0003-1768-1802EricShea-BrownUniversity of Washington, SeattleKrishnaV.ShenoyDepartments of Electrical Engineering, Bioengineering and Neurobiology, Stanford University, Stanford CA 94305 and Howard Hughes Medical Institute at Stanford University, Stanford, CA 943050000-0003-1534-9240CarolinaL.ShimabukuroUniversity of Buenos Aires, Argentina0000-0001-5669-4097SergeyShuvaevCold Spring Harbor Laboratory0000-0001-5215-8019ManChing AlisonSinCornell University0000-0002-4889-1397MauriceSmithHarvard University, School of Engineering and Applied Sciences, Cambridge MA0000-0003-4214-1277NicholasA.SteinmetzUniversity of Washington, Seattle0000-0001-7029-2908KarolinaStosioVolkswagen Group Machine Learning Research Lab, MunichElizabethStraleyBaylor College of MedicineGabrielleStrandquistUniversity of Washington, Seattle0000-0002-8345-6905CarsenStringerHHMI Janelia Research CampusRimjhimTomarCzech Academy of Sciences, Prague0000-0003-1528-976XNgocTranCold Spring Harbor LaboratorySofiaTriantafillouUniversity of Pittsburgh0000-0002-2535-0432LawrenceUdeigweManhattan College0000-0002-7627-4820DavideValerianiHarvard Medical School, Boston MA0000-0001-9866-0063VincentValtonUniversity College London0000-0002-2508-6731MaryamVaziri-PashkamNational Institute of Mental Health0000-0003-1830-2501PeterVincentSainsbury Wellcome Centre0000-0002-2641-1874GalVishneThe Hebrew University, Jerusalem, Israel0000-0001-7906-2543PascalWallischNew York University0000-0001-6047-349XPeiyuanWangArizona State University, Tempe, AZ0000-0003-2289-1660ClaireWardAlbert Einstein College of Medicine0000-0002-1486-4403MichaelWaskomNew York UniversityKunlinWeiPeking University0000-0001-5098-3808AnqiWuColumbia University, USA0000-0002-7866-9455ZhengweiWuBaylor College of MedicineBradWyblePenn State University, State College, PA0000-0002-9984-3037LeiZhangDepartment of Cognition, Emotion, and Methods in Psychology, Faculty of Psychology, University of Vienna, Vienna, Austria0000-0002-9586-595XDanielZysmanDeepLearning.AI0000-0002-5924-1154Federicod'OleireUquillasPrinceton Neuroscience Institute, Princeton University, NJ, USA0000-0001-9078-9452Taravan ViegenPrinceton Neuroscience Institute, Princeton University, NJ, USA0000-0001-6109-100410.21105/jose.00118https://doi.org/10.17605/OSF.IO/CFN4UPython, Jupyter Notebookhttps://jose.theoj.org/papers/10.21105/jose.00118.pdfneuroscience, computational, online, summer schooltag:jose.theoj.org,2005:Paper/1542022-01-26T22:07:11Z2022-01-27T00:01:05ZComputational models of human social behavior and neuroscience: An open educational course and Jupyter Book to advance computational trainingacceptedv1.0.02021-09-28 04:04:03 UTC472022-01-26 22:07:11 UTC52022146ShawnA.RhoadsGeorgetown University0000-0003-1350-9458LinGanGeorgetown University0000-0002-7775-211810.21105/jose.00146https://doi.org/10.5281/zenodo.5907205https://jose.theoj.org/papers/10.21105/jose.00146.pdfComputational Modeling, Cognitive Modeling, Model Comparison, Linear Modeling, Nonlinear Modeling, Reinforcement Learning, Psychological Science, Social Psychology, Social Behavior, Behavioral Science, Cognitive Science, Data Science, Cognitive Neuroscience, Python, Jupyter Booktag:jose.theoj.org,2005:Paper/762022-01-08T16:54:35Z2022-01-09T00:02:14ZDeveloping and deploying an integrated workshop curriculum teaching computational skills for reproducible researchacceptedv0.1.02021-05-21 12:46:22 UTC472022-01-08 16:54:35 UTC52022144ZenaLappDepartment of Computational Medicine & Bioinformatics, University of Michigan0000-0003-4674-2176KellyL.SovacoolDepartment of Computational Medicine & Bioinformatics, University of Michigan0000-0003-3283-829XNickLesniakDepartment of Microbiology & Immunology, University of Michigan0000-0001-9359-5194DanaKingBRCF Bioinformatics Core, University of Michigan0000-0003-4635-5272CatherineBarnierDepartment of Computational Medicine & Bioinformatics, University of Michigan0000-0001-7074-4011MatthewFlickingerDepartment of Biostatistics, University of Michigan0000-0002-8528-8925JuleKrügerCenter for Political Studies, Institute for Social Research, University of Michigan0000-0002-2814-137XCourtneyR.ArmourDepartment of Microbiology & Immunology, University of Michigan0000-0002-5250-1224MayaM.LappIndependent educator0000-0002-8249-1186JasonTallantBiological Station, University of Michigan0000-0003-4790-8772RuchengDiaoDepartment of Computational Medicine & Bioinformatics, University of Michigan0000-0002-2932-6755MorganOnekaDepartment of Computational Medicine & Bioinformatics, University of Michigan0000-0002-9672-0445SarahTomkovichDepartment of Microbiology & Immunology, University of Michigan0000-0003-1638-5307JacquelineMoltzauAndersonDepartment of Microbiology & Immunology, University of Michigan0000-0003-1398-5980SarahK.LucasDepartment of Microbiology & Immunology, University of Michigan0000-0003-1676-5801PatrickD.SchlossDepartment of Microbiology & Immunology, University of Michigan0000-0002-6935-427510.21105/jose.00144https://doi.org/10.5281/zenodo.5812479Ruby, JavaScripthttps://jose.theoj.org/papers/10.21105/jose.00144.pdfreproducible research, data science, R, git, Unix shelltag:jose.theoj.org,2005:Paper/542021-12-30T11:50:36Z2021-12-31T00:01:36ZA narrative approach to building computational capacity for climate change impact assessment in professional master's studentsaccepted2020-07-262020-07-26 20:39:34 UTC462021-12-30 11:50:36 UTC42021100ConorI.AndersonDepartment of Physical and Environmental Sciences, University of Toronto0000-0003-2619-1207KarenL.SmithDepartment of Physical and Environmental Sciences, University of Toronto0000-0002-4652-631010.21105/jose.00100https://doi.org/10.5281/zenodo.5807576R, nesChttps://jose.theoj.org/papers/10.21105/jose.00100.pdfPython, climate change, graduatetag:jose.theoj.org,2005:Paper/342021-08-26T20:54:13Z2021-08-27T07:37:43ZFAIR_Bioinfo: a turnkey training course and protocol for reproducible computational biologyacceptedv1.2.02019-07-18 13:47:47 UTC422021-08-26 20:54:13 UTC4202168ThomasDeneckerCEA, CNRS, Univ. Paris-Sud, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France.0000-0003-1421-7641ClaireToffano-NiocheCEA, CNRS, Univ. Paris-Sud, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France.0000-0003-4134-684410.21105/jose.00068https://doi.org/10.5281/zenodo.5105349Jupyter Notebook, R, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00068.pdfReproducibility, Bioinformatics, Computational Biology, FAIRtag:jose.theoj.org,2005:Paper/462021-06-27T22:18:28Z2021-06-28T00:02:21ZAn open source crash course on parameter estimation of computational models using a Bayesian optimization approachacceptedv1.0.02020-04-07 10:37:11 UTC402021-06-27 22:18:28 UTC4202189MojtabaBarzegariBiomechanics Section, Department of Mechanical Engineering, KU Leuven, Belgium0000-0002-1456-0610LiesbetGerisBiomechanics Section, Department of Mechanical Engineering, KU Leuven, Belgium, Biomechanics Research Unit, GIGA in Silico Medicine, University of Liège, Belgium0000-0002-8180-144510.21105/jose.00089https://doi.org/10.5281/zenodo.5013865Jupyter Notebook, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00089.pdfinverse problems, parameter estimation, partial differential equations, Bayesian optimizationtag:jose.theoj.org,2005:Paper/572021-04-27T17:35:55Z2022-12-24T14:21:32ZStarBLAST: a scalable BLAST+ solution for the classroomacceptedv1.0.02020-10-02 17:26:37 UTC382021-04-27 17:35:55 UTC42021102MicheleCosiData Sciences Institute, University of Arizona, Tucson, AZ 85721, USA0000-0001-7609-1939J.j.ForstedtData Sciences Institute, University of Arizona, Tucson, AZ 85721, USA0000-0003-4484-0127EmmanuelGonzalezData Sciences Institute, University of Arizona, Tucson, AZ 85721, USA0000-0002-3021-9842ZhuoyunXuData Sciences Institute, University of Arizona, Tucson, AZ 85721, USA0000-0002-6322-3012SateeshPeriData Sciences Institute, University of Arizona, Tucson, AZ 85721, USA0000-0002-9879-9070ReetuTutejaData Sciences Institute, University of Arizona, Tucson, AZ 85721, USA0000-0001-7628-4108KaiBlumbergData Sciences Institute, University of Arizona, Tucson, AZ 85721, USA0000-0002-3410-4655TannerCampbellData Sciences Institute, University of Arizona, Tucson, AZ 85721, USA0000-0001-9418-1663NiravMerchantData Sciences Institute, University of Arizona, Tucson, AZ 85721, USA0000-0002-1988-8180EricLyonsData Sciences Institute, University of Arizona, Tucson, AZ 85721, USA0000-0002-3348-884510.21105/jose.00102https://doi.org/10.5281/zenodo.4688218Chttps://jose.theoj.org/papers/10.21105/jose.00102.pdfDistributed computing, Containers, BLAST, Genetics, Education