tag:jose.theoj.org,2005:/papers/tagged/biologyJournal of Open Source Education2023-08-23T12:38:51ZJournal of Open Source Educationhttps://jose.theoj.orgtag:jose.theoj.org,2005:Paper/2082023-08-23T12:38:51Z2023-08-24T00:00:21ZEcological Forecasting and Dynamics: A graduate course on the fundamentals of time series and forecasting in ecologyacceptedv2.1.02023-01-04 15:23:57 UTC662023-08-23 12:38:51 UTC62023198S.K. MorganErnestDepartment of Wildlife Ecology and Conservation, University of Florida, Biodiversity Institute, University of Florida0000-0002-6026-8530HaoYeDepartment of Wildlife Ecology and Conservation, University of Florida, Health Science Center Libraries, University of Florida0000-0002-8630-1458EthanP.WhiteDepartment of Wildlife Ecology and Conservation, University of Florida, Biodiversity Institute, University of Florida, Informatics Institute, University of Florida0000-0001-6728-774510.21105/jose.00198https://doi.org/10.5281/zenodo.8250308Rhttps://jose.theoj.org/papers/10.21105/jose.00198.pdfbiology, forecasting, ecological dynamics, time series, programming, models, uncertaintytag:jose.theoj.org,2005:Paper/632022-04-23T12:21:45Z2022-04-26T14:32:25ZWI Fast Stats: a collection of web apps for the visualization and analysis of WI Fast Plants dataacceptedv2.02020-12-14 15:47:03 UTC502022-04-23 12:21:45 UTC52022159YizhouLiuDepartment of Computer Science, University of Wisconsin-MadisonClaudiaSolis-LemusWisconsin Institute for Discovery and Department of Plant Pathology, University of Wisconsin-Madison0000-0002-9789-891510.21105/jose.00159https://doi.org/10.5281/zenodo.6473988R, JavaScripthttps://jose.theoj.org/papers/10.21105/jose.00159.pdfbiology, data science, elementary school, high school, middle school, educationtag:jose.theoj.org,2005:Paper/1172022-04-15T20:28:30Z2022-04-16T00:01:18ZData Carpentry for Biologists: A semester long Data Carpentry course using ecological and other biological examplesacceptedv4.1.02021-08-26 11:54:50 UTC502022-04-15 20:28:30 UTC52022139EthanP.WhiteDepartment of Wildlife Ecology and Conservation, University of Florida, Biodiversity Institute, University of Florida, Informatics Institute, University of Florida0000-0001-6728-7745ZacharyT.BrymTropical Research and Education Center, Department of Agronomy, University of Florida0000-0002-0659-2938AndrewJ.MarxDepartment of Wildlife Ecology and Conservation, University of Florida0000-0002-7456-1631KristinaRiemerCollege of Agriculture and Life Sciences, University of Arizona0000-0003-3802-3331SergioMarconiSchool of Forest Resources & Conservation, University of Florida0000-0002-8096-754XDavidJ.HarrisDepartment of Wildlife Ecology and Conservation, University of Florida0000-0003-3332-9307VirnalizCruzSchool of Natural Resources and Environment, University of Florida0000-0001-6783-2651S.K. MorganErnestDepartment of Wildlife Ecology and Conservation, University of Florida, Biodiversity Institute, University of Florida0000-0002-6026-853010.21105/jose.00139https://doi.org/10.5281/zenodo.5821925Ruby, Python, R, Jupyter Notebookhttps://jose.theoj.org/papers/10.21105/jose.00139.pdfecology, biology, data manipulation, data management, programming, databases, geospatial datatag:jose.theoj.org,2005:Paper/342021-08-26T20:54:13Z2021-08-27T07:37:43ZFAIR_Bioinfo: a turnkey training course and protocol for reproducible computational biologyacceptedv1.2.02019-07-18 13:47:47 UTC422021-08-26 20:54:13 UTC4202168ThomasDeneckerCEA, CNRS, Univ. Paris-Sud, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France.0000-0003-1421-7641ClaireToffano-NiocheCEA, CNRS, Univ. Paris-Sud, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France.0000-0003-4134-684410.21105/jose.00068https://doi.org/10.5281/zenodo.5105349Jupyter Notebook, R, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00068.pdfReproducibility, Bioinformatics, Computational Biology, FAIRtag:jose.theoj.org,2005:Paper/222019-06-06T17:00:09Z2021-05-23T15:21:15ZA graduate student-led participatory live-coding quantitative methods course in R: Experiences on initiating, developing, and teachingacceptedv2.1.02019-01-15 13:23:04 UTC162019-06-06 17:00:09 UTC2201949LukeW.JohnstonDepartment of Nutritional Sciences, University of Toronto, Department of Public Health, Aarhus University0000-0003-4169-2616MadeleineBonsma-FisherDepartment of Physics, University of Toronto0000-0002-5813-4664JoelOstblomInstitute of Biomaterials and Biomedical Engineering, University of Toronto0000-0003-0051-3239AhmedR.HasanDepartment of Cell and Systems Biology, University of Toronto0000-0003-0002-8399JamesS.SantangeloDepartment of Ecology and Evolutionary Biology, University of Toronto0000-0002-5921-2548LindsayCoomeDepartment of Psychology, University of Toronto0000-0001-8126-3571LinaTranDepartment of Physiology, University of Toronto0000-0003-3504-4524ElliottSalesde AndradeDepartment of Physics, University of Toronto0000-0001-7310-8942SaraMahallatiInstitute of Biomaterials and Biomedical Engineering, University of Toronto0000-0002-6765-089810.21105/jose.00049https://doi.org/10.5281/zenodo.3240508Rhttps://jose.theoj.org/papers/10.21105/jose.00049.pdfecology, statistics, biology, undergraduatetag:jose.theoj.org,2005:Paper/162019-01-17T22:17:29Z2021-05-23T15:21:15Ztreesiftr: An R package and server for viewing phylogenetic trees and dataacceptedv1.0.02018-08-31 17:09:20 UTC162019-01-17 22:17:29 UTC2201935AprilM.WrightSoutheastern Louisiana University0000-0003-4692-322510.21105/jose.00035https://doi.org/10.5281/zenodo.2541824Rhttps://jose.theoj.org/papers/10.21105/jose.00035.pdfbiology, paleobiology, phylogeny