tag:jose.theoj.org,2005:/papers/publishedJournal of Open Source Education2024-02-14T21:52:31ZJournal of Open Source Educationhttps://jose.theoj.orgtag:jose.theoj.org,2005:Paper/2142024-02-14T21:52:31Z2024-02-15T13:27:00ZA Data Carpentry- Style Metagenomics Workshopacceptedv1.0.02023-04-12 01:45:02 UTC722024-02-14 21:52:31 UTC72024209ClaudiaZirión-MartínezLaboratorio de Genómica Ecológica y Evolutiva, Langebio, Cinvestav, México.DiegoGarfias-GallegosLaboratorio de Genómica Ecológica y Evolutiva, Langebio, Cinvestav, México.TaniaVanessaArellano-FernandezLaboratorio de Sistemas Genéticos, Langebio, Cinvestav, México., Escuela Nacional de Estudios Superiores, Unidad León, UNAM, México.AarónEspinosa-JaimeEscuela Nacional de Estudios Superiores, Unidad León, UNAM, México.EdderD.Bustos-DíazLaboratorio de Evolución de la Diversidad Metabólica, Langebio, Cinvestav, México.JoséAbelLovaco-FloresBetterLab - C3. Irapuato, México., Escuela Nacional de Estudios Superiores, Unidad León, UNAM, México.LuisGerardoTejero-GómezCentro de Ciencias Matemáticas. UNAM, México.JAbrahamAvelar-RivasLaboratorio de Sistemas Genéticos, Langebio, Cinvestav, México., BetterLab - C3. Irapuato, México.NellySélem-MojicaCentro de Ciencias Matemáticas. UNAM, México.0000-0003-1697-386210.21105/jose.00209https://doi.org/10.5281/zenodo.8306876Ruby, R, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00209.pdfShotgun Metagenomics, bash, data processing, visualizationtag:jose.theoj.org,2005:Paper/2082023-08-23T12:38:51Z2023-08-24T00:00:21ZEcological Forecasting and Dynamics: A graduate course on the fundamentals of time series and forecasting in ecologyacceptedv2.1.02023-01-04 15:23:57 UTC662023-08-23 12:38:51 UTC62023198S.K. MorganErnestDepartment of Wildlife Ecology and Conservation, University of Florida, Biodiversity Institute, University of Florida0000-0002-6026-8530HaoYeDepartment of Wildlife Ecology and Conservation, University of Florida, Health Science Center Libraries, University of Florida0000-0002-8630-1458EthanP.WhiteDepartment of Wildlife Ecology and Conservation, University of Florida, Biodiversity Institute, University of Florida, Informatics Institute, University of Florida0000-0001-6728-774510.21105/jose.00198https://doi.org/10.5281/zenodo.8250308Rhttps://jose.theoj.org/papers/10.21105/jose.00198.pdfbiology, forecasting, ecological dynamics, time series, programming, models, uncertaintytag:jose.theoj.org,2005:Paper/1992023-08-15T15:31:26Z2023-08-16T00:00:40ZFrom Maps to Models - Tutorials for structural geological modeling using GemPy and GemGISacceptedv.1.0.02022-07-02 13:42:41 UTC662023-08-15 15:31:26 UTC62023185AlexanderJüstelFraunhofer IEG, Fraunhofer Research Institution for Energy Infrastructures and Geothermal Systems IEG, Kockerellstraße 17, 52062 Aachen, Germany, RWTH Aachen University, Geological Institute, Wüllnerstraße 2, 52062 Aachen, Germany0000-0003-0980-7479Miguelde la VargaTerranigma Solutions GmbH, Laurentiusstraße 59, 52072 Aachen, Germany0000-0001-6941-2685NilsChudallaRWTH Aachen University, Institute for Computational Geoscience, Geothermics and Reservoir Geophysics, Mathieustraße 30, 52074 Aachen, GermanyJanDavidWagnerFraunhofer IEG, Fraunhofer Research Institution for Energy Infrastructures and Geothermal Systems IEG, Kockerellstraße 17, 52062 Aachen, Germany, RWTH Aachen University, Geological Institute, Wüllnerstraße 2, 52062 Aachen, Germany0009-0007-7673-8334StefanBackRWTH Aachen University, Geological Institute, Wüllnerstraße 2, 52062 Aachen, Germany0000-0003-3134-3367FlorianWellmannFraunhofer IEG, Fraunhofer Research Institution for Energy Infrastructures and Geothermal Systems IEG, Kockerellstraße 17, 52062 Aachen, Germany, RWTH Aachen University, Institute for Computational Geoscience, Geothermics and Reservoir Geophysics, Mathieustraße 30, 52074 Aachen, Germany0000-0003-2552-187610.21105/jose.00185QML, Jupyter Notebook, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00185.pdfgeology, geographic, structural geology, GIS, spatial datatag:jose.theoj.org,2005:Paper/2122023-08-10T13:17:31Z2023-08-11T00:00:16ZPlanet_LB: Lattice-Boltzmann solutions for planetary geodynamics problemsacceptedv1.0.02023-03-08 01:07:16 UTC662023-08-10 13:17:31 UTC62023205CraigJ.O'NeillSchool of Earth and Atmospheric Science, Queensland University of Technology0000-0002-6034-188110.21105/jose.00205https://doi.org/10.5281/zenodo.8226562Jupyter Notebook, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00205.pdfgeodynamics, subduction, geologytag:jose.theoj.org,2005:Paper/1982023-08-08T12:26:42Z2023-08-10T07:45:21ZThe Data Behind Dark Matter: Exploring Galactic Rotationacceptedv1.0.42022-06-17 20:22:52 UTC662023-08-08 12:26:42 UTC62023184A.n.VillanoDepartment of Physics, University of Colorado Denver, Denver CO 80217, USA0000-0002-3893-7259KittyC.HarrisIntegrated Sciences, University of Colorado Denver, Denver CO 80217, USA0000-0001-5406-8367JuditBergfalkAstrophysical & Planetary Sciences, University of Colorado Boulder, Boulder, CO 80309, USA0000-0003-1662-0768RaphaelHatamiDepartment of Physics, University of Colorado Denver, Denver CO 80217, USAFrancisVititoeDepartment of Physics, University of Colorado Boulder, Boulder, CO 80309, USAJuliaJohnstonAstrophysical & Planetary Sciences, University of Colorado Boulder, Boulder, CO 80309, USA10.21105/jose.00184https://doi.org/10.5281/zenodo.7951874Jupyter Notebook, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00184.pdfJupyter, Binder, Workshop, Astronomytag:jose.theoj.org,2005:Paper/2112023-08-08T10:44:59Z2023-08-09T00:00:39ZManim Slides: A Python package for presenting Manim content anywhereacceptedv4.9.22023-03-03 15:53:42 UTC662023-08-08 10:44:59 UTC62023206JéromeEertmansICTEAM, UCLouvain, Belgium0000-0002-5579-536010.21105/jose.00206https://doi.org/10.5281/zenodo.8215167Pythonhttps://jose.theoj.org/papers/10.21105/jose.00206.pdfmanim, animations, teaching, conference presentations, tooltag:jose.theoj.org,2005:Paper/2102023-05-20T21:54:15Z2023-06-20T00:00:34ZR for Data Analysis: An open-source resource for teaching and learning analytics with Raccepted1.0.02023-02-16 00:07:05 UTC632023-05-20 21:54:15 UTC62023202TrevorFrenchIndependent Researcher, USA0000-0002-6246-224910.21105/jose.00202https://doi.org/10.5281/zenodo.7896407JavaScripthttps://jose.theoj.org/papers/10.21105/jose.00202.pdfR, data analysis, education, analytics, datatag:jose.theoj.org,2005:Paper/2092023-05-20T21:42:06Z2023-06-20T00:00:36ZCourse Materials for an Introduction to Data-Driven Chemistryacceptedv1.0.0.2023-01-14 11:32:47 UTC632023-05-20 21:42:06 UTC62023192JamesCumbyEaStCHEM School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom0000-0002-9499-3319MatteoT.DegiacomiDepartment of Physics, Durham University, South Road, Durham, DH1 3LE, United Kingdom0000-0003-4672-471XValentinaErastovaEaStCHEM School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom0000-0002-6747-3297J.JasminGüvenEaStCHEM School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom0000-0003-1555-0075ClaireL.HobdayEaStCHEM School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom0000-0003-4925-4557AntoniaS. j. s.MeyEaStCHEM School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom0000-0001-7512-5252HannahPollakEaStCHEM School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom0000-0003-1011-8478RafalSzablaDepartment of Physical and Quantum Chemistry, Faculty of Chemistry, Wrocław University of Science and Technology, Wrocław, Poland0000-0002-1668-804410.21105/jose.00192https://doi.org/10.5281/zenodo.7782433Jupyter Notebook, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00192.pdfchemistry, python, undergraduatetag:jose.theoj.org,2005:Paper/532023-03-23T22:04:17Z2023-06-20T00:00:51ZParFlow Sand Tank: A tool for groundwater explorationacceptedv1.0.62020-07-24 16:55:32 UTC612023-03-23 22:04:17 UTC62023179LauraE.CondonUniversity of Arizona, Department of Hydrology and Atmospheric Sciences0000-0003-3639-8076AbramFarleyUniversity of Arizona, Department of Hydrology and Atmospheric Sciences0000-0001-7871-6269SebastienJourdainKitware, Inc.0000-0001-8083-271XPatrickO'learyKitware, Inc.0000-0003-2829-4277PatrickAveryKitware, Inc.0000-0003-2254-1345LisaGallagherPrinceton Environmental Institute, Integrated Groundwater Modeling Center0000-0002-5556-7739CallaChennaultPrinceton University, Department of Civil and Environmental Engineering0000-0002-6258-0042ReedM.MaxwellPrinceton University, Department of Civil and Environmental Engineering, Princeton Environmental Institute, Integrated Groundwater Modeling Center0000-0002-1364-444110.21105/jose.00179https://doi.org/10.5281/zenodo.7384472JavaScript, Vuehttps://jose.theoj.org/papers/10.21105/jose.00179.pdfgroundwater, hydrology, modeling, educationtag:jose.theoj.org,2005:Paper/1592023-03-04T21:10:02Z2023-06-20T00:00:41Zpendsim: Developing, Simulating, and Visualizing Feedback Controlled Inverted Pendulum Dynamicsacceptedv1.02022-01-11 18:51:45 UTC612023-03-04 21:10:02 UTC62023168MikeSutherlandDepartment of Mechanical and Aerospace Engineering, University of California, Irvine0000-0001-5394-2737DavidA.CoppDepartment of Mechanical and Aerospace Engineering, University of California, Irvine0000-0002-5206-522310.21105/jose.00168https://doi.org/10.5281/zenodo.7603937Python, Jupyter Notebookhttps://jose.theoj.org/papers/10.21105/jose.00168.pdfcontrol theory, dynamics, control, engineering simulation