tag:jose.theoj.org,2005:/papers/in/RJournal of Open Source Education2024-02-14T21:52:31ZJournal of Open Source Educationhttps://jose.theoj.orgtag:jose.theoj.org,2005:Paper/2142024-02-14T21:52:31Z2024-02-15T13:27:00ZA Data Carpentry- Style Metagenomics Workshopacceptedv1.0.02023-04-12 01:45:02 UTC722024-02-14 21:52:31 UTC72024209ClaudiaZirión-MartínezLaboratorio de Genómica Ecológica y Evolutiva, Langebio, Cinvestav, México.DiegoGarfias-GallegosLaboratorio de Genómica Ecológica y Evolutiva, Langebio, Cinvestav, México.TaniaVanessaArellano-FernandezLaboratorio de Sistemas Genéticos, Langebio, Cinvestav, México., Escuela Nacional de Estudios Superiores, Unidad León, UNAM, México.AarónEspinosa-JaimeEscuela Nacional de Estudios Superiores, Unidad León, UNAM, México.EdderD.Bustos-DíazLaboratorio de Evolución de la Diversidad Metabólica, Langebio, Cinvestav, México.JoséAbelLovaco-FloresBetterLab - C3. Irapuato, México., Escuela Nacional de Estudios Superiores, Unidad León, UNAM, México.LuisGerardoTejero-GómezCentro de Ciencias Matemáticas. UNAM, México.JAbrahamAvelar-RivasLaboratorio de Sistemas Genéticos, Langebio, Cinvestav, México., BetterLab - C3. Irapuato, México.NellySélem-MojicaCentro de Ciencias Matemáticas. UNAM, México.0000-0003-1697-386210.21105/jose.00209https://doi.org/10.5281/zenodo.8306876Ruby, R, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00209.pdfShotgun Metagenomics, bash, data processing, visualizationtag:jose.theoj.org,2005:Paper/2082023-08-23T12:38:51Z2023-08-24T00:00:21ZEcological Forecasting and Dynamics: A graduate course on the fundamentals of time series and forecasting in ecologyacceptedv2.1.02023-01-04 15:23:57 UTC662023-08-23 12:38:51 UTC62023198S.K. MorganErnestDepartment of Wildlife Ecology and Conservation, University of Florida, Biodiversity Institute, University of Florida0000-0002-6026-8530HaoYeDepartment of Wildlife Ecology and Conservation, University of Florida, Health Science Center Libraries, University of Florida0000-0002-8630-1458EthanP.WhiteDepartment of Wildlife Ecology and Conservation, University of Florida, Biodiversity Institute, University of Florida, Informatics Institute, University of Florida0000-0001-6728-774510.21105/jose.00198https://doi.org/10.5281/zenodo.8250308Rhttps://jose.theoj.org/papers/10.21105/jose.00198.pdfbiology, forecasting, ecological dynamics, time series, programming, models, uncertaintytag:jose.theoj.org,2005:Paper/632022-04-23T12:21:45Z2022-04-26T14:32:25ZWI Fast Stats: a collection of web apps for the visualization and analysis of WI Fast Plants dataacceptedv2.02020-12-14 15:47:03 UTC502022-04-23 12:21:45 UTC52022159YizhouLiuDepartment of Computer Science, University of Wisconsin-MadisonClaudiaSolis-LemusWisconsin Institute for Discovery and Department of Plant Pathology, University of Wisconsin-Madison0000-0002-9789-891510.21105/jose.00159https://doi.org/10.5281/zenodo.6473988R, JavaScripthttps://jose.theoj.org/papers/10.21105/jose.00159.pdfbiology, data science, elementary school, high school, middle school, educationtag:jose.theoj.org,2005:Paper/1172022-04-15T20:28:30Z2022-04-16T00:01:18ZData Carpentry for Biologists: A semester long Data Carpentry course using ecological and other biological examplesacceptedv4.1.02021-08-26 11:54:50 UTC502022-04-15 20:28:30 UTC52022139EthanP.WhiteDepartment of Wildlife Ecology and Conservation, University of Florida, Biodiversity Institute, University of Florida, Informatics Institute, University of Florida0000-0001-6728-7745ZacharyT.BrymTropical Research and Education Center, Department of Agronomy, University of Florida0000-0002-0659-2938AndrewJ.MarxDepartment of Wildlife Ecology and Conservation, University of Florida0000-0002-7456-1631KristinaRiemerCollege of Agriculture and Life Sciences, University of Arizona0000-0003-3802-3331SergioMarconiSchool of Forest Resources & Conservation, University of Florida0000-0002-8096-754XDavidJ.HarrisDepartment of Wildlife Ecology and Conservation, University of Florida0000-0003-3332-9307VirnalizCruzSchool of Natural Resources and Environment, University of Florida0000-0001-6783-2651S.K. MorganErnestDepartment of Wildlife Ecology and Conservation, University of Florida, Biodiversity Institute, University of Florida0000-0002-6026-853010.21105/jose.00139https://doi.org/10.5281/zenodo.5821925Ruby, Python, R, Jupyter Notebookhttps://jose.theoj.org/papers/10.21105/jose.00139.pdfecology, biology, data manipulation, data management, programming, databases, geospatial datatag:jose.theoj.org,2005:Paper/492022-04-13T11:24:28Z2022-04-14T00:01:39ZAn Applied Geographic Information Systems and Science Course in Raccepted2.02020-05-05 15:59:10 UTC502022-04-13 11:24:28 UTC52022141AndrewMacLachlanThe Bartlett Centre for Advanced Spatial Analysis, University College London0000-0003-0356-1623AdamDennettThe Bartlett Centre for Advanced Spatial Analysis, University College London0000-0001-8036-018510.21105/jose.00141https://doi.org/10.5281/zenodo.6375745R, JavaScripthttps://jose.theoj.org/papers/10.21105/jose.00141.pdfSpatial data science, Smart cities, rstatstag:jose.theoj.org,2005:Paper/542021-12-30T11:50:36Z2021-12-31T00:01:36ZA narrative approach to building computational capacity for climate change impact assessment in professional master's studentsaccepted2020-07-262020-07-26 20:39:34 UTC462021-12-30 11:50:36 UTC42021100ConorI.AndersonDepartment of Physical and Environmental Sciences, University of Toronto0000-0003-2619-1207KarenL.SmithDepartment of Physical and Environmental Sciences, University of Toronto0000-0002-4652-631010.21105/jose.00100https://doi.org/10.5281/zenodo.5807576R, nesChttps://jose.theoj.org/papers/10.21105/jose.00100.pdfPython, climate change, graduatetag:jose.theoj.org,2005:Paper/692021-10-09T19:22:16Z2021-10-10T10:03:49Zr-cubed: Guiding the overwhelmed scientist from random wrangling to Reproducible Research in Racceptedv3.02021-02-08 17:57:38 UTC442021-10-09 19:22:16 UTC42021122LukeW.JohnstonSteno Diabetes Center Aarhus, Aarhus, Denmark0000-0003-4169-2616HeleneBaekJuelNovo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Copenhagen, Denmark0000-0002-5763-8545BettinaLenggerNovo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark0000-0001-9997-7011DanielR.WitteSteno Diabetes Center Aarhus, Aarhus, Denmark, Department of Public Health, Aarhus University, Aarhus, Denmark0000-0002-0769-2922HannahChatwinUniversity of Southern Denmark, Odense, Denmark0000-0001-7248-8568MaleneRevsbechChristiansenNovo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Copenhagen, Denmark0000-0002-9772-3576AndersAastedIsaksenDepartment of Public Health, Aarhus University, Aarhus, Denmark0000-0001-8457-546610.21105/jose.00122https://doi.org/10.5281/zenodo.5548398Rhttps://jose.theoj.org/papers/10.21105/jose.00122.pdfrstats, reproducible research, reproducibility, introduction, workflow, open education, open science, data analysistag:jose.theoj.org,2005:Paper/342021-08-26T20:54:13Z2021-08-27T07:37:43ZFAIR_Bioinfo: a turnkey training course and protocol for reproducible computational biologyacceptedv1.2.02019-07-18 13:47:47 UTC422021-08-26 20:54:13 UTC4202168ThomasDeneckerCEA, CNRS, Univ. Paris-Sud, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France.0000-0003-1421-7641ClaireToffano-NiocheCEA, CNRS, Univ. Paris-Sud, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France.0000-0003-4134-684410.21105/jose.00068https://doi.org/10.5281/zenodo.5105349Jupyter Notebook, R, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00068.pdfReproducibility, Bioinformatics, Computational Biology, FAIRtag:jose.theoj.org,2005:Paper/442021-07-21T20:18:34Z2021-07-22T00:00:17ZTake a moderndive into introductory linear regression with Racceptedv0.4.02020-03-19 16:29:01 UTC412021-07-21 20:18:34 UTC42021115AlbertY.KimAssistant Professor of Statistical and Data Sciences, Smith College, Northampton, MA, USA.0000-0001-7824-306XChesterIsmayData Science Evangelist, DataRobot, Portland, OR, USA.0000-0003-2820-2547MaxKuhnSoftware Engineer, RStudio, USA.0000-0003-2402-136X10.21105/jose.00115https://doi.org/10.5281/zenodo.5119261Rhttps://jose.theoj.org/papers/10.21105/jose.00115.pdfRstats, tidyverse, regression, moderndive, modeling, modelling, kaggletag:jose.theoj.org,2005:Paper/392021-05-25T12:18:06Z2021-05-26T00:02:26ZGeneral relativity in R: visual representation of Schwarzschild space using different coordinate systemsaccepted1.0-12019-11-06 22:39:07 UTC392021-05-25 12:18:06 UTC4202191RobinK. s.HankinAuckland University of Technology0000-0001-5982-041510.21105/jose.00091https://doi.org/10.5281/zenodo.4784248Rhttps://jose.theoj.org/papers/10.21105/jose.00091.pdfSchwarzschild metric, Schwarzschild solution, general relativity, black holes, event horizon, Eddington Finkelstein, Kruskal-Szekeres coordinates, Gullstrand-Painleve coordinates, Penrose diagram, Software infrastructure