tag:jose.theoj.org,2005:/papers/edited_by/@magsolJournal of Open Source Education2023-08-08T10:44:59ZJournal of Open Source Educationhttps://jose.theoj.orgtag:jose.theoj.org,2005:Paper/2112023-08-08T10:44:59Z2023-08-09T00:00:39ZManim Slides: A Python package for presenting Manim content anywhereacceptedv4.9.22023-03-03 15:53:42 UTC662023-08-08 10:44:59 UTC62023206JéromeEertmansICTEAM, UCLouvain, Belgium0000-0002-5579-536010.21105/jose.00206https://doi.org/10.5281/zenodo.8215167Pythonhttps://jose.theoj.org/papers/10.21105/jose.00206.pdfmanim, animations, teaching, conference presentations, tooltag:jose.theoj.org,2005:Paper/502022-05-23T22:16:12Z2023-06-15T09:03:54ZCourse Materials for Data Science in Practiceaccepted1.02020-07-01 22:32:09 UTC512022-05-23 22:16:12 UTC52022121ThomasDonoghueDepartment of Cognitive Science, UC San Diego0000-0001-5911-0472BradleyVoytekDepartment of Cognitive Science, UC San Diego, Halıcıoğlu Data Science Institute, UC San Diego, Neurosciences Graduate Program, UC San Diego0000-0003-1640-2525ShannonEllisDepartment of Cognitive Science, UC San Diego, Halıcıoğlu Data Science Institute, UC San Diego0000-0002-9231-048110.21105/jose.00121https://doi.org/10.5281/zenodo.6568091Jupyter Notebookhttps://jose.theoj.org/papers/10.21105/jose.00121.pdfdata science, pythontag:jose.theoj.org,2005:Paper/712022-04-27T20:33:30Z2022-04-28T14:55:23ZEPIDEMIC: Epidemiology Educational Codeaccepted1.0.02021-03-02 18:15:56 UTC502022-04-27 20:33:30 UTC52022149BrunaPavlackFederal Institute of Mato Grosso do Sul, State University of São Paulo0000-0002-6807-0916MalúGraveFederal University of Rio de Janeiro0000-0002-7697-0658EberDantasFederal University of Rio de Janeiro0000-0003-2693-0719JulioBasilioRio de Janeiro State University0000-0003-1040-735XLeonardode la RocaRio de Janeiro State University0000-0003-2896-228XJoãoPedroNorenbergState University of São Paulo0000-0003-3558-4053MichelTosinRio de Janeiro State University0000-0002-0112-553XLucasChavesFederal University of Uberlândia0000-0003-4567-2006DiegoMatosRio de Janeiro State University0000-0002-6711-8500MarcosIssaRio de Janeiro State University0000-0002-2811-4929RobertoLuoRio de Janeiro State University0000-0002-3822-4945AmandaCunhaGuytCity College of San Francisco0000-0001-8575-3594LuthianaSoaresFederal University of Pampa0000-0001-5314-0881RodrigoBurgosRio de Janeiro State University0000-0003-0326-395XLisandroLovisoloRio de Janeiro State University0000-0002-7404-9371AmericoCunhaRio de Janeiro State University0000-0002-8342-036310.21105/jose.00149https://doi.org/10.5281/zenodo.5930686Matlabhttps://jose.theoj.org/papers/10.21105/jose.00149.pdfepidemiology teaching, educational code, computational models, compartmental models, trend and forecast graphstag:jose.theoj.org,2005:Paper/762022-01-08T16:54:35Z2022-01-09T00:02:14ZDeveloping and deploying an integrated workshop curriculum teaching computational skills for reproducible researchacceptedv0.1.02021-05-21 12:46:22 UTC472022-01-08 16:54:35 UTC52022144ZenaLappDepartment of Computational Medicine & Bioinformatics, University of Michigan0000-0003-4674-2176KellyL.SovacoolDepartment of Computational Medicine & Bioinformatics, University of Michigan0000-0003-3283-829XNickLesniakDepartment of Microbiology & Immunology, University of Michigan0000-0001-9359-5194DanaKingBRCF Bioinformatics Core, University of Michigan0000-0003-4635-5272CatherineBarnierDepartment of Computational Medicine & Bioinformatics, University of Michigan0000-0001-7074-4011MatthewFlickingerDepartment of Biostatistics, University of Michigan0000-0002-8528-8925JuleKrügerCenter for Political Studies, Institute for Social Research, University of Michigan0000-0002-2814-137XCourtneyR.ArmourDepartment of Microbiology & Immunology, University of Michigan0000-0002-5250-1224MayaM.LappIndependent educator0000-0002-8249-1186JasonTallantBiological Station, University of Michigan0000-0003-4790-8772RuchengDiaoDepartment of Computational Medicine & Bioinformatics, University of Michigan0000-0002-2932-6755MorganOnekaDepartment of Computational Medicine & Bioinformatics, University of Michigan0000-0002-9672-0445SarahTomkovichDepartment of Microbiology & Immunology, University of Michigan0000-0003-1638-5307JacquelineMoltzauAndersonDepartment of Microbiology & Immunology, University of Michigan0000-0003-1398-5980SarahK.LucasDepartment of Microbiology & Immunology, University of Michigan0000-0003-1676-5801PatrickD.SchlossDepartment of Microbiology & Immunology, University of Michigan0000-0002-6935-427510.21105/jose.00144https://doi.org/10.5281/zenodo.5812479Ruby, JavaScripthttps://jose.theoj.org/papers/10.21105/jose.00144.pdfreproducible research, data science, R, git, Unix shelltag:jose.theoj.org,2005:Paper/462021-06-27T22:18:28Z2021-06-28T00:02:21ZAn open source crash course on parameter estimation of computational models using a Bayesian optimization approachacceptedv1.0.02020-04-07 10:37:11 UTC402021-06-27 22:18:28 UTC4202189MojtabaBarzegariBiomechanics Section, Department of Mechanical Engineering, KU Leuven, Belgium0000-0002-1456-0610LiesbetGerisBiomechanics Section, Department of Mechanical Engineering, KU Leuven, Belgium, Biomechanics Research Unit, GIGA in Silico Medicine, University of Liège, Belgium0000-0002-8180-144510.21105/jose.00089https://doi.org/10.5281/zenodo.5013865Jupyter Notebook, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00089.pdfinverse problems, parameter estimation, partial differential equations, Bayesian optimizationtag:jose.theoj.org,2005:Paper/402020-04-04T12:08:19Z2021-05-23T15:21:15ZEduCortex: browser-based 3D brain visualization of fMRI meta-analysis mapsacceptedv1.0.02019-11-22 00:22:05 UTC262020-04-04 12:08:19 UTC3202075PaulS.ScottiThe Ohio State University, Ohio, USA0000-0003-4912-8809ArmanKulkarniUniversity of Wisconsin-Madison, Wisconsin, USAMatanMazorUniversity College London, London, UKEduardKlapwijkLeiden University, Leiden, NetherlandsTalYarkoniUniversity of Texas at Austin, Texas, USAAlexanderHuthUniversity of Texas at Austin, Texas, USA10.21105/jose.00075https://doi.org/10.5281/zenodo.3732375Jupyter Notebookhttps://jose.theoj.org/papers/10.21105/jose.00075.pdfvisualization, meta analysis, functional mapping, educational tool, neurosynthtag:jose.theoj.org,2005:Paper/332019-11-07T18:46:58Z2021-05-23T15:21:15ZDraggleSimulator: An Open Source Web Application for Teaching Genetic Driftacceptedv1.0.02019-07-15 23:58:09 UTC212019-11-07 18:46:58 UTC2201970MarkA.FisherPortland Community College, Clark College0000-0002-7138-702510.21105/jose.00070https://doi.org/10.5281/zenodo.3523488JavaScript, TypeScripthttps://jose.theoj.org/papers/10.21105/jose.00070.pdfgenetic drift, evolution, simulation, metapopulation, meta population, allele frequency, allele frequencies, Angular