tag:jose.theoj.org,2005:/papers/edited_by/@labarbaJournal of Open Source Education2022-10-09T19:04:17ZJournal of Open Source Educationhttps://jose.theoj.orgtag:jose.theoj.org,2005:Paper/372022-10-09T19:04:17Z2023-06-20T00:00:54ZSedEdu: software organizing sediment-related educational modulesacceptedv1.1.62019-08-16 01:51:21 UTC562022-10-09 19:04:17 UTC52022129AndrewJ.MoodieRice University (Houston, TX, USA), University of Texas at Austin (Austin, TX, USA)0000-0002-6745-036XBrandeeCarlsonRice University (Houston, TX, USA), University of Colorado Boulder (Boulder, CO, USA)BradyZ.ForemanWestern Washington University (Bellingham, WA, USA)0000-0002-4168-0618JeffreyKwangUniversity of Illinois at Urbana-Champaign (Urbana, IL, USA), University of Massachusetts Amherst (Amherst, MA, USA)KensukeNaitoUniversity of Illinois at Urbana-Champaign (Urbana, IL, USA), Universidad de Ingeniería y Tecnología (Lima, Peru)0000-0001-8683-0846JeffreyA.NittrouerRice University (Houston, TX, USA), Texas Tech University (Lubbock, TX, USA)0000-0002-4762-015710.21105/jose.00129https://doi.org/10.5281/zenodo.7044895Pythonhttps://jose.theoj.org/papers/10.21105/jose.00129.pdfgeology, sedimentology, hydrologytag:jose.theoj.org,2005:Paper/642022-07-05T21:13:26Z2023-11-27T18:57:09ZAuto-eD: A visual learning tool for automatic differentiationacceptedv1.0.02020-12-18 21:55:15 UTC532022-07-05 21:13:26 UTC52022161LindseyS.BrownHarvard John A. Paulson School of Engineering and Applied Sciences0000-0002-9387-1387RachelMoonData Innovation Labs0000-0002-5906-7192DavidSondakHarvard John A. Paulson School of Engineering and Applied Sciences0000-0002-2730-909710.21105/jose.00161https://doi.org/10.5281/zenodo.6800009Python, Jupyter Notebook, JavaScripthttps://jose.theoj.org/papers/10.21105/jose.00161.pdfautomatic differentiationtag:jose.theoj.org,2005:Paper/512022-03-31T21:18:37Z2022-04-17T21:02:25ZInteractive Bin Packing: A Java Application for Learning Constructive Heuristics for Combinatorial Optimizationacceptedv3.02020-07-03 17:35:43 UTC492022-03-31 21:18:37 UTC52022140VincentA.CicirelloComputer Science, School of Business, Stockton University, Galloway, NJ 082050000-0003-1072-855910.21105/jose.00140https://doi.org/10.5281/zenodo.6402123Javahttps://jose.theoj.org/papers/10.21105/jose.00140.pdfcombinatorial optimization, bin packing, constructive heuristics, discrete optimization, self-guided tutorialtag:jose.theoj.org,2005:Paper/542021-12-30T11:50:36Z2021-12-31T00:01:36ZA narrative approach to building computational capacity for climate change impact assessment in professional master's studentsaccepted2020-07-262020-07-26 20:39:34 UTC462021-12-30 11:50:36 UTC42021100ConorI.AndersonDepartment of Physical and Environmental Sciences, University of Toronto0000-0003-2619-1207KarenL.SmithDepartment of Physical and Environmental Sciences, University of Toronto0000-0002-4652-631010.21105/jose.00100https://doi.org/10.5281/zenodo.5807576R, nesChttps://jose.theoj.org/papers/10.21105/jose.00100.pdfPython, climate change, graduatetag:jose.theoj.org,2005:Paper/342021-08-26T20:54:13Z2021-08-27T07:37:43ZFAIR_Bioinfo: a turnkey training course and protocol for reproducible computational biologyacceptedv1.2.02019-07-18 13:47:47 UTC422021-08-26 20:54:13 UTC4202168ThomasDeneckerCEA, CNRS, Univ. Paris-Sud, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France.0000-0003-1421-7641ClaireToffano-NiocheCEA, CNRS, Univ. Paris-Sud, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France.0000-0003-4134-684410.21105/jose.00068https://doi.org/10.5281/zenodo.5105349Jupyter Notebook, R, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00068.pdfReproducibility, Bioinformatics, Computational Biology, FAIRtag:jose.theoj.org,2005:Paper/292021-07-14T22:07:36Z2021-07-17T09:58:15ZmLEARn: An Implementation of Multi-layer Perceptron in C++acceptedv1.0.12019-05-22 13:02:43 UTC412021-07-14 22:07:36 UTC4202159KaluU.OgburekeGRLMC, Rovira i Virgili University, Tarragona Spain0000-0002-8152-486310.21105/jose.00059https://doi.org/10.5281/zenodo.5093771C++https://jose.theoj.org/papers/10.21105/jose.00059.pdfneural networks, multi-layer perceptron, deep learning, stochastic gradient descenttag:jose.theoj.org,2005:Paper/412021-05-24T18:02:11Z2021-05-25T00:01:36ZGame Theory and Python: An educational tutorial to game theory and repeated games using Pythonacceptedv.0.0.12019-12-05 12:42:27 UTC392021-05-24 18:02:11 UTC4202178NikoletaE.GlynatsiDepartment of Mathematics, Cardiff University, Senghennydd Rd, Cardiff CF24 4AG, Max Planck Institute for Evolutionary Biology, August-Thienemann-Straße 2, 24306 Plön0000-0002-2943-3622VincentA.KnightDepartment of Mathematics, Cardiff University, Senghennydd Rd, Cardiff CF24 4AG0000-0002-4245-063810.21105/jose.00078https://doi.org/10.5281/zenodo.4783322Jupyter Notebook, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00078.pdfgame theory, repeated games, prisoner's dilemma, axelrod pythontag:jose.theoj.org,2005:Paper/272019-09-29T20:57:57Z2021-05-23T15:21:15ZHappy Belly Bioinformatics: an open-source resource dedicated to helping biologists utilize bioinformaticsacceptedv1.1.12019-05-07 01:58:32 UTC412019-09-29 20:57:57 UTC4201953MichaelD.LeeExobiology Branch, NASA Ames Research Center, Moffett Field, CA, USA0000-0001-7750-914510.21105/jose.00053https://doi.org/10.5281/zenodo.3402376Ruby, JavaScript, Pythonhttps://jose.theoj.org/papers/10.21105/jose.00053.pdfbioinformatics, tutorialtag:jose.theoj.org,2005:Paper/212019-04-26T14:24:10Z2021-05-23T15:21:15ZA course on Geographic Data Scienceacceptedv4.02019-01-05 16:12:40 UTC162019-04-26 14:24:10 UTC2201942DaniArribas-BelGeographic Data Science Lab, The University of Liverpool0000-0002-6274-161910.21105/jose.00042https://doi.org/10.5281/zenodo.2650534Rubyhttps://jose.theoj.org/papers/10.21105/jose.00042.pdfGeographic Data Science, GIS, Data Science, geopandas, pysaltag:jose.theoj.org,2005:Paper/182019-01-06T21:08:57Z2021-05-23T15:21:15Znbgrader: A Tool for Creating and Grading Assignments in the Jupyter Notebookacceptedv0.5.42018-10-06 15:46:00 UTC162019-01-06 21:08:57 UTC2201932ProjectJupyterUniversity of California, BerkeleyDouglasBlankBryn Mawr College0000-0003-3538-8829DavidBourginUniversity of California, Berkeley0000-0003-1039-6195AlexanderBrownLafayette College0000-0002-3945-7337MatthiasBussonnierUniversity of California, Berkeley0000-0002-7636-8632JonathanFredericGoogle Inc.0000-0003-4805-2216BrianGrangerCal Poly, San Luis Obispo0000-0002-5223-6168ThomasL.GriffithsUniversity of California, Berkeley0000-0002-5138-7255JessicaHamrickDeepMind0000-0002-3860-0429KyleKelleyNetflix, Inc.0000-0002-4281-9351MPacerNetflix, Inc.0000-0002-6680-2941LoganPageUniversity of Pretoria0000-0002-5799-8524FernandoPérezUniversity of California, Berkeley0000-0002-1725-9815BenjaminRagan-KelleySimula Research Laboratory0000-0002-1023-7082JordanW.SuchowUniversity of California, Berkeley0000-0001-9848-4872CarolWillingCal Poly, San Luis Obispo0000-0002-9817-848510.21105/jose.00032https://doi.org/10.5281/zenodo.2532780PowerShell, Python, Makohttps://jose.theoj.org/papers/10.21105/jose.00032.pdfjupyter, jupyterhub, grading, autograding